PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7488_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 279aa    MW: 31660.6 Da    PI: 5.8764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7488_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-071291701055
                 HHHHHH.HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdr.iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +rRRd+ + +++++L++llP++      K + +++L  A+eY+k+Lq
  RrC7488_p3 129 KRRRDDmMSNKMHTLQRLLPNC-----HKEDTVSVLDTAIEYMKDLQ 170
                 5566552789***********9.....699****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.23120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-5125175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-8129174No hitNo description
PfamPF000105.7E-5129170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-9130177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-11130186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009642Biological Processresponse to light intensity
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003712Molecular Functiontranscription cofactor activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MELGWNNDVG SLAVKDKGMS ERENSDEERL ITGLKSSYGY VDHDQANIQF QIVPEIHKEE  60
ENSEKDLKLA VPDEHSETGH HHDHQINGFS DSSDNHDKLK RSRLENFSDD ESEGFTREVP  120
TVTIKGFKKR RRDDMMSNKM HTLQRLLPNC HKEDTVSVLD TAIEYMKDLQ FQLQVMSIMR  180
RNRYFALATL NLGMHNDLVT AMAMTQGINL VNQTTSPPLI PTPNWPLPPF SNIPFPHTSN  240
QSLFPTTALP ASSTQCLCGL VPCFPSFLDF SSHMMGGRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584111.11e-164PREDICTED: LOW QUALITY PROTEIN: transcription factor HFR1
SwissprotQ9FE221e-120HFR1_ARATH; Transcription factor HFR1
TrEMBLA0A078FQU01e-151A0A078FQU0_BRANA; BnaC05g01110D protein
STRINGAT1G02340.11e-118(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140151624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02340.11e-111bHLH family protein